{"name":"1000 Genomes phase3:GRCh38","metadata":[{"id":"CIEND","description":"Confidence interval around END for imprecise variants","info":{},"number":"2","type":"Integer","key":"INFO"},{"number":"2","info":{},"type":"Integer","key":"INFO","id":"CIPOS","description":"Confidence interval around POS for imprecise variants"},{"id":"CS","description":"Source call set.","key":"INFO","info":{},"number":"1","type":"String"},{"id":"END","description":"End coordinate of this variant","key":"INFO","number":"1","info":{},"type":"Integer"},{"id":"IMPRECISE","description":"Imprecise structural variation","key":"INFO","number":"0","info":{},"type":"Flag"},{"description":"Merged calls.","id":"MC","key":"INFO","type":"String","number":".","info":{}},{"type":"String","number":"4","info":{},"key":"INFO","description":"Mobile element info of the form NAME,START,ENDPOLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END","id":"MEINFO"},{"id":"MEND","description":"Mitochondrial end coordinate of inserted sequence","number":"1","info":{},"type":"Integer","key":"INFO"},{"id":"MLEN","description":"Estimated length of mitochondrial insert","number":"1","info":{},"type":"Integer","key":"INFO"},{"key":"INFO","type":"Integer","number":"1","info":{},"description":"Mitochondrial start coordinate of inserted sequence","id":"MSTART"},{"id":"SVLEN","description":"Difference in length between REF and ALT alleles","number":".","info":{},"type":"Integer","key":"INFO"},{"key":"INFO","type":"String","number":"1","info":{},"description":"Type of structural variant","id":"SVTYPE"},{"id":"TSD","description":"Precise Target Site Duplication for bases, if unknown, value will be NULL","number":"1","info":{},"type":"String","key":"INFO"},{"id":"AC","description":"Total number of alternate alleles in called genotypes","number":"A","info":{},"type":"Integer","key":"INFO"},{"id":"AF","description":"Estimated allele frequency in the range (0,1)","key":"INFO","info":{},"number":"A","type":"Float"},{"id":"NS","description":"Number of samples with data","info":{},"number":"1","type":"Integer","key":"INFO"},{"id":"AN","description":"Total number of alleles in called genotypes","key":"INFO","number":"1","info":{},"type":"Integer"},{"description":"Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)","id":"EAS_AF","type":"Float","info":{},"number":"A","key":"INFO"},{"description":"Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)","id":"EUR_AF","key":"INFO","type":"Float","info":{},"number":"A"},{"number":"A","info":{},"type":"Float","key":"INFO","id":"AFR_AF","description":"Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)"},{"number":"A","info":{},"type":"Float","key":"INFO","id":"AMR_AF","description":"Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)"},{"key":"INFO","number":"A","info":{},"type":"Float","id":"SAS_AF","description":"Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)"},{"type":"Integer","number":"1","info":{},"key":"INFO","description":"Total read depth","id":"DP"},{"id":"ssID","description":"dbSNP ssID of the allele","info":{},"number":"A","type":"String","key":"INFO"},{"id":"TRANSFORM_TO_DIFFERENT_POS","description":"The transformationm for dbSNP results in different POS for the alleles on this line","key":"INFO","number":"0","info":{},"type":"Flag"},{"description":"Is Assembly specific. This is set if the variant only maps to one assembly (dbSNP flag)","id":"ASP","key":"INFO","type":"Flag","info":{},"number":"0"},{"key":"INFO","number":"1","info":{},"type":"Integer","id":"WGT","description":"Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more (dbSNP flag)"},{"info":{},"number":"0","type":"Flag","key":"INFO","id":"RV","description":"RS orientation is reversed (dbSNP flag)"},{"info":{},"number":"1","type":"String","key":"INFO","id":"WGT_ref_RS","description":"rsID to which the remapping of INFO flag WGT relates"},{"id":"ERR_REF","description":"The REF cannot be resolved between builds","key":"INFO","info":{},"number":"0","type":"Flag"},{"key":"INFO","type":"Flag","info":{},"number":"0","description":"The REF matched the - strand in GRCh38","id":"MATCHED_REV"},{"info":{},"number":"0","type":"Flag","key":"INFO","id":"MATCHED_FWD","description":"The REF matched the + strand in GRCh38"},{"key":"INFO","type":"Flag","info":{},"number":"0","description":"The REF and ALT have switched between GRCh37 and GRCh38","id":"SWITCHED_REF"},{"description":"The REF has changed to a non-PHASE3 ALT","id":"REF_SWITCHED_TO_NON_PHASE3_ALT","key":"INFO","type":"Flag","info":{},"number":"0"},{"key":"INFO","info":{},"number":"0","type":"Flag","id":"ALLELES_DIFFERENT_POS","description":"dbSNP has different POS for ALTS on the same line"},{"description":"An ID has been missed in remapping","id":"MISSED_ID","key":"INFO","type":"Flag","number":"0","info":{}},{"key":"INFO","type":"Flag","number":"0","info":{},"description":"An ALT has been missed in remapping","id":"MISSED_ALT"},{"type":"Flag","info":{},"number":"0","key":"INFO","description":"The rs cannot be used to remap","id":"NO_RS_TO_MAP_TO"},{"description":"Genotype","id":"GT","type":"String","number":"1","info":{},"key":"FORMAT"}],"datasetId":"6e340c4d1e333c7a676b1710d2e3953c","referenceSetId":"GRCh38","id":"1"}