{"referenceSetId":"GRCh38","datasetId":"6e340c4d1e333c7a676b1710d2e3953c","name":"1000 Genomes phase3:GRCh38","id":"1","metadata":[{"number":"2","description":"Confidence interval around END for imprecise variants","type":"Integer","info":{},"key":"INFO","id":"CIEND"},{"info":{},"id":"CIPOS","key":"INFO","number":"2","description":"Confidence interval around POS for imprecise variants","type":"Integer"},{"info":{},"key":"INFO","id":"CS","number":"1","type":"String","description":"Source call set."},{"id":"END","key":"INFO","info":{},"number":"1","type":"Integer","description":"End coordinate of this variant"},{"info":{},"key":"INFO","id":"IMPRECISE","type":"Flag","description":"Imprecise structural variation","number":"0"},{"description":"Merged calls.","type":"String","number":".","info":{},"id":"MC","key":"INFO"},{"type":"String","description":"Mobile element info of the form NAME,START,ENDPOLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END","number":"4","info":{},"key":"INFO","id":"MEINFO"},{"number":"1","type":"Integer","description":"Mitochondrial end coordinate of inserted sequence","info":{},"id":"MEND","key":"INFO"},{"info":{},"id":"MLEN","key":"INFO","number":"1","description":"Estimated length of mitochondrial insert","type":"Integer"},{"number":"1","type":"Integer","description":"Mitochondrial start coordinate of inserted sequence","key":"INFO","id":"MSTART","info":{}},{"number":".","description":"Difference in length between REF and ALT alleles","type":"Integer","info":{},"id":"SVLEN","key":"INFO"},{"description":"Type of structural variant","type":"String","number":"1","key":"INFO","id":"SVTYPE","info":{}},{"description":"Precise Target Site Duplication for bases, if unknown, value will be NULL","type":"String","number":"1","info":{},"id":"TSD","key":"INFO"},{"key":"INFO","id":"AC","info":{},"number":"A","type":"Integer","description":"Total number of alternate alleles in called genotypes"},{"type":"Float","description":"Estimated allele frequency in the range (0,1)","number":"A","id":"AF","key":"INFO","info":{}},{"id":"NS","key":"INFO","info":{},"type":"Integer","description":"Number of samples with data","number":"1"},{"key":"INFO","id":"AN","info":{},"number":"1","description":"Total number of alleles in called genotypes","type":"Integer"},{"number":"A","type":"Float","description":"Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)","id":"EAS_AF","key":"INFO","info":{}},{"id":"EUR_AF","key":"INFO","info":{},"type":"Float","description":"Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)","number":"A"},{"info":{},"id":"AFR_AF","key":"INFO","description":"Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)","type":"Float","number":"A"},{"id":"AMR_AF","key":"INFO","info":{},"type":"Float","description":"Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)","number":"A"},{"info":{},"key":"INFO","id":"SAS_AF","number":"A","description":"Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)","type":"Float"},{"info":{},"key":"INFO","id":"DP","number":"1","type":"Integer","description":"Total read depth"},{"description":"dbSNP ssID of the allele","type":"String","number":"A","key":"INFO","id":"ssID","info":{}},{"info":{},"key":"INFO","id":"TRANSFORM_TO_DIFFERENT_POS","number":"0","type":"Flag","description":"The transformationm for dbSNP results in different POS for the alleles on this line"},{"id":"ASP","key":"INFO","info":{},"description":"Is Assembly specific. This is set if the variant only maps to one assembly (dbSNP flag)","type":"Flag","number":"0"},{"number":"1","description":"Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more (dbSNP flag)","type":"Integer","info":{},"id":"WGT","key":"INFO"},{"key":"INFO","id":"RV","info":{},"description":"RS orientation is reversed (dbSNP flag)","type":"Flag","number":"0"},{"description":"rsID to which the remapping of INFO flag WGT relates","type":"String","number":"1","info":{},"id":"WGT_ref_RS","key":"INFO"},{"key":"INFO","id":"ERR_REF","info":{},"description":"The REF cannot be resolved between builds","type":"Flag","number":"0"},{"description":"The REF matched the - strand in GRCh38","type":"Flag","number":"0","id":"MATCHED_REV","key":"INFO","info":{}},{"info":{},"key":"INFO","id":"MATCHED_FWD","number":"0","description":"The REF matched the + strand in GRCh38","type":"Flag"},{"id":"SWITCHED_REF","key":"INFO","info":{},"type":"Flag","description":"The REF and ALT have switched between GRCh37 and GRCh38","number":"0"},{"key":"INFO","id":"REF_SWITCHED_TO_NON_PHASE3_ALT","info":{},"description":"The REF has changed to a non-PHASE3 ALT","type":"Flag","number":"0"},{"description":"dbSNP has different POS for ALTS on the same line","type":"Flag","number":"0","info":{},"id":"ALLELES_DIFFERENT_POS","key":"INFO"},{"type":"Flag","description":"An ID has been missed in remapping","number":"0","info":{},"id":"MISSED_ID","key":"INFO"},{"key":"INFO","id":"MISSED_ALT","info":{},"number":"0","type":"Flag","description":"An ALT has been missed in remapping"},{"description":"The rs cannot be used to remap","type":"Flag","number":"0","id":"NO_RS_TO_MAP_TO","key":"INFO","info":{}},{"number":"1","description":"Genotype","type":"String","info":{},"id":"GT","key":"FORMAT"}]}