{"metadata":[{"number":"2","id":"CIEND","type":"Integer","info":{},"description":"Confidence interval around END for imprecise variants","key":"INFO"},{"info":{},"description":"Confidence interval around POS for imprecise variants","key":"INFO","number":"2","id":"CIPOS","type":"Integer"},{"key":"INFO","info":{},"description":"Source call set.","type":"String","number":"1","id":"CS"},{"id":"END","number":"1","type":"Integer","description":"End coordinate of this variant","info":{},"key":"INFO"},{"key":"INFO","description":"Imprecise structural variation","info":{},"type":"Flag","id":"IMPRECISE","number":"0"},{"id":"MC","number":".","type":"String","info":{},"description":"Merged calls.","key":"INFO"},{"type":"String","number":"4","id":"MEINFO","key":"INFO","info":{},"description":"Mobile element info of the form NAME,START,ENDPOLARITY; If there is only 5' OR 3' support for this call, will be NULL NULL for START and END"},{"key":"INFO","description":"Mitochondrial end coordinate of inserted sequence","info":{},"type":"Integer","id":"MEND","number":"1"},{"type":"Integer","id":"MLEN","number":"1","key":"INFO","info":{},"description":"Estimated length of mitochondrial insert"},{"description":"Mitochondrial start coordinate of inserted sequence","info":{},"key":"INFO","id":"MSTART","number":"1","type":"Integer"},{"number":".","id":"SVLEN","type":"Integer","info":{},"description":"Difference in length between REF and ALT alleles","key":"INFO"},{"type":"String","id":"SVTYPE","number":"1","key":"INFO","info":{},"description":"Type of structural variant"},{"type":"String","number":"1","id":"TSD","key":"INFO","info":{},"description":"Precise Target Site Duplication for bases, if unknown, value will be NULL"},{"number":"A","id":"AC","type":"Integer","description":"Total number of alternate alleles in called genotypes","info":{},"key":"INFO"},{"description":"Estimated allele frequency in the range (0,1)","info":{},"key":"INFO","id":"AF","number":"A","type":"Float"},{"id":"NS","number":"1","type":"Integer","description":"Number of samples with data","info":{},"key":"INFO"},{"id":"AN","number":"1","type":"Integer","description":"Total number of alleles in called genotypes","info":{},"key":"INFO"},{"number":"A","id":"EAS_AF","type":"Float","description":"Allele frequency in the EAS populations calculated from AC and AN, in the range (0,1)","info":{},"key":"INFO"},{"key":"INFO","info":{},"description":"Allele frequency in the EUR populations calculated from AC and AN, in the range (0,1)","type":"Float","number":"A","id":"EUR_AF"},{"key":"INFO","description":"Allele frequency in the AFR populations calculated from AC and AN, in the range (0,1)","info":{},"type":"Float","id":"AFR_AF","number":"A"},{"type":"Float","number":"A","id":"AMR_AF","key":"INFO","description":"Allele frequency in the AMR populations calculated from AC and AN, in the range (0,1)","info":{}},{"description":"Allele frequency in the SAS populations calculated from AC and AN, in the range (0,1)","info":{},"key":"INFO","number":"A","id":"SAS_AF","type":"Float"},{"id":"DP","number":"1","type":"Integer","info":{},"description":"Total read depth","key":"INFO"},{"number":"A","id":"ssID","type":"String","description":"dbSNP ssID of the allele","info":{},"key":"INFO"},{"type":"Flag","number":"0","id":"TRANSFORM_TO_DIFFERENT_POS","key":"INFO","info":{},"description":"The transformationm for dbSNP results in different POS for the alleles on this line"},{"info":{},"description":"Is Assembly specific. This is set if the variant only maps to one assembly (dbSNP flag)","key":"INFO","id":"ASP","number":"0","type":"Flag"},{"type":"Integer","id":"WGT","number":"1","key":"INFO","description":"Weight, 00 - unmapped, 1 - weight 1, 2 - weight 2, 3 - weight 3 or more (dbSNP flag)","info":{}},{"type":"Flag","id":"RV","number":"0","key":"INFO","info":{},"description":"RS orientation is reversed (dbSNP flag)"},{"id":"WGT_ref_RS","number":"1","type":"String","description":"rsID to which the remapping of INFO flag WGT relates","info":{},"key":"INFO"},{"type":"Flag","id":"ERR_REF","number":"0","key":"INFO","info":{},"description":"The REF cannot be resolved between builds"},{"description":"The REF matched the - strand in GRCh38","info":{},"key":"INFO","number":"0","id":"MATCHED_REV","type":"Flag"},{"description":"The REF matched the + strand in GRCh38","info":{},"key":"INFO","number":"0","id":"MATCHED_FWD","type":"Flag"},{"description":"The REF and ALT have switched between GRCh37 and GRCh38","info":{},"key":"INFO","id":"SWITCHED_REF","number":"0","type":"Flag"},{"description":"The REF has changed to a non-PHASE3 ALT","info":{},"key":"INFO","number":"0","id":"REF_SWITCHED_TO_NON_PHASE3_ALT","type":"Flag"},{"type":"Flag","number":"0","id":"ALLELES_DIFFERENT_POS","key":"INFO","info":{},"description":"dbSNP has different POS for ALTS on the same line"},{"type":"Flag","number":"0","id":"MISSED_ID","key":"INFO","info":{},"description":"An ID has been missed in remapping"},{"key":"INFO","info":{},"description":"An ALT has been missed in remapping","type":"Flag","id":"MISSED_ALT","number":"0"},{"number":"0","id":"NO_RS_TO_MAP_TO","type":"Flag","info":{},"description":"The rs cannot be used to remap","key":"INFO"},{"id":"GT","number":"1","type":"String","description":"Genotype","info":{},"key":"FORMAT"}],"datasetId":"6e340c4d1e333c7a676b1710d2e3953c","referenceSetId":"GRCh38","name":"1000 Genomes phase3:GRCh38","id":"1"}